J3_5LMP_005

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMP_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1178

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5LMP|1|A|C|936
5LMP|1|A|A|937
5LMP|1|A|A|938
5LMP|1|A|G|939
*
5LMP|1|A|C|1344
5LMP|1|A|U|1345
5LMP|1|A|A|1346
5LMP|1|A|G|1347
5LMP|1|A|U|1348
5LMP|1|A|A|1349
5LMP|1|A|A|1350
*
5LMP|1|A|U|1372
5LMP|1|A|G|1373
5LMP|1|A|A|1374
5LMP|1|A|A|1375
5LMP|1|A|U|1376
5LMP|1|A|A|1377
5LMP|1|A|C|1378
5LMP|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9