3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
5LMR|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LMR_003 not in the Motif Atlas
Homologous match to J3_6CZR_017
Geometric discrepancy: 0.1612
The information below is about J3_6CZR_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.3
Basepair signature
cWW-F-cWW-F-F-tWW-F-cWW-F
Number of instances in this motif group
5

Unit IDs

5LMR|1|A|U|672
5LMR|1|A|G|673
*
5LMR|1|A|C|717
5LMR|1|A|G|718
5LMR|1|A|C|719
5LMR|1|A|C|720
5LMR|1|A|G|721
5LMR|1|A|A|722
5LMR|1|A|U|723
5LMR|1|A|G|724
5LMR|1|A|G|725
*
5LMR|1|A|C|732
5LMR|1|A|A|733
5LMR|1|A|G|734

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain K
30S ribosomal protein S11
Chain O
30S ribosomal protein S15
Chain R
30S ribosomal protein S18
Chain Y
mRNA

Coloring options:


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