3D structure

PDB id
5LMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.45 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
5LMR|1|A|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LMR_017 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1187
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5LMR|1|A|C|1116
5LMR|1|A|G|1117
5LMR|1|A|C|1118
*
5LMR|1|A|G|1155
5LMR|1|A|G|1156
5LMR|1|A|A|1157
5LMR|1|A|C|1158
5LMR|1|A|U|1159
5LMR|1|A|G|1160
5LMR|1|A|C|1161
*
5LMR|1|A|G|1175
5LMR|1|A|A|1176
5LMR|1|A|G|1177
5LMR|1|A|G|1178
5LMR|1|A|A|1179
5LMR|1|A|A|1180
5LMR|1|A|G|1181
5LMR|1|A|G|1182
5LMR|1|A|A|1183
5LMR|1|A|G|1184

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14 type Z

Coloring options:


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