J3_5LMS_014
3D structure
- PDB id
- 5LMS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 5LMS|1|A|C|48, 5LMS|1|A|A|50, 5LMS|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LMS_014 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.1051
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LMS|1|A|G|46
5LMS|1|A|C|47
5LMS|1|A|C|48
5LMS|1|A|U|49
5LMS|1|A|A|50
5LMS|1|A|A|51
5LMS|1|A|G|52
*
5LMS|1|A|U|359
5LMS|1|A|A|360
5LMS|1|A|G|361
5LMS|1|A|G|362
5LMS|1|A|A|363
5LMS|1|A|A|364
5LMS|1|A|U|365
5LMS|1|A|C|366
5LMS|1|A|U|367
*
5LMS|1|A|A|393
5LMS|1|A|G|394
5LMS|1|A|C|395
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
Coloring options: