3D structure

PDB id
5LMU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
5LMU|1|A|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LMU_008 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.1689
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

5LMU|1|A|C|990
5LMU|1|A|U|991
5LMU|1|A|U|992
5LMU|1|A|G|993
5LMU|1|A|A|994
5LMU|1|A|C|995
5LMU|1|A|A|996
5LMU|1|A|U|997
*
5LMU|1|A|A|1044
5LMU|1|A|C|1045
5LMU|1|A|A|1046
5LMU|1|A|G|1047
*
5LMU|1|A|C|1210
5LMU|1|A|U|1211
5LMU|1|A|U|1212
5LMU|1|A|A|1213
5LMU|1|A|C|1214
5LMU|1|A|G|1215

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain N
30S ribosomal protein S14 type Z

Coloring options:


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