J3_5LMV_007

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

5LMV|1|A|A|975, 5LMV|1|A|G|976, 5LMV|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMV_007 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0898

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5LMV|1|A|U|955
5LMV|1|A|U|956
5LMV|1|A|U|957
5LMV|1|A|A|958
5LMV|1|A|A|959
5LMV|1|A|U|960
5LMV|1|A|U|961
5LMV|1|A|C|962
*
5LMV|1|A|G|973
5LMV|1|A|A|974
5LMV|1|A|A|975
5LMV|1|A|G|976
5LMV|1|A|A|977
5LMV|1|A|A|978
5LMV|1|A|C|979
5LMV|1|A|C|980
5LMV|1|A|U|981
5LMV|1|A|U|982
5LMV|1|A|A|983
5LMV|1|A|C|984
*
5LMV|1|A|G|1221
5LMV|1|A|G|1222
5LMV|1|A|C|1223
5LMV|1|A|G|1224
5LMV|1|A|A|1225

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19