J3_5LMV_009

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGGAAC*GGUGC*GAGCCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMV|1|A|G|1001|||A
5LMV|1|A|G|1002
5LMV|1|A|G|1003
5LMV|1|A|A|1004
5LMV|1|A|A|1005
5LMV|1|A|C|1006
*
5LMV|1|A|G|1023
5LMV|1|A|G|1024
5LMV|1|A|U|1025
5LMV|1|A|G|1026
5LMV|1|A|C|1027
*
5LMV|1|A|G|1034
5LMV|1|A|A|1035
5LMV|1|A|G|1036
5LMV|1|A|C|1037
5LMV|1|A|C|1038
5LMV|1|A|C|1039

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3