J3_5LMV_015

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

5LMV|1|A|C|48, 5LMV|1|A|A|50, 5LMV|1|A|A|51, 5LMV|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMV|1|A|G|46
5LMV|1|A|C|47
5LMV|1|A|C|48
5LMV|1|A|U|49
5LMV|1|A|A|50
5LMV|1|A|A|51
5LMV|1|A|G|52
*
5LMV|1|A|U|359
5LMV|1|A|A|360
5LMV|1|A|G|361
5LMV|1|A|G|362
5LMV|1|A|A|363
5LMV|1|A|A|364
5LMV|1|A|U|365
5LMV|1|A|C|366
5LMV|1|A|U|367
5LMV|1|A|U|368
5LMV|1|A|C|369
*
5LMV|1|A|G|392
5LMV|1|A|A|393
5LMV|1|A|G|394
5LMV|1|A|C|395

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16

Chain a

Translation initiation factor IF-2