3D structure

PDB id
5LYB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
AUGAAAAG*CG*CU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LYB_002 not in the Motif Atlas
Homologous match to J3_5TBW_002
Geometric discrepancy: 0.0514
The information below is about J3_5TBW_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_69021.1
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
7

Unit IDs

5LYB|1|1|A|369
5LYB|1|1|U|370
5LYB|1|1|G|371
5LYB|1|1|A|372
5LYB|1|1|A|373
5LYB|1|1|A|374
5LYB|1|1|A|375
5LYB|1|1|G|376
*
5LYB|1|1|C|403
5LYB|1|1|G|404
*
5LYB|1|4|C|19
5LYB|1|4|U|20

Current chains

Chain 1
25S rRNA
Chain 4
5.8S rRNA

Nearby chains

Chain L4
60S ribosomal protein L4-A
Chain N6
60S ribosomal protein L26-A
Chain O9
60S ribosomal protein L39

Coloring options:


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