J3_5LYB_036

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LYB_036 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2069

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5LYB|1|5|G|1230
5LYB|1|5|A|1231
5LYB|1|5|C|1232
*
5LYB|1|5|G|1256
5LYB|1|5|C|1257
5LYB|1|5|U|1258
5LYB|1|5|A|1259
5LYB|1|5|A|1260
5LYB|1|5|G|1261
5LYB|1|5|G|1262
*
5LYB|1|5|C|1277
5LYB|1|5|A|1278
5LYB|1|5|C|1279

Current chains

Chain 5

25S rRNA

Nearby chains

Chain m2

60S Ribosomal Protein L12

Chain p0

60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,60S Ribosomal Protein P0