J3_5LYB_082

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

5LYB|1|6|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LYB_082 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0433

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5LYB|1|6|A|41
5LYB|1|6|G|42
5LYB|1|6|A|43
5LYB|1|6|U|44
5LYB|1|6|U|45
5LYB|1|6|A|46
5LYB|1|6|A|47
5LYB|1|6|G|48
*
5LYB|1|6|C|431
5LYB|1|6|G|432
5LYB|1|6|C|433
5LYB|1|6|G|434
5LYB|1|6|C|435
5LYB|1|6|A|436
5LYB|1|6|A|437
5LYB|1|6|A|438
5LYB|1|6|U|439
*
5LYB|1|6|A|464
5LYB|1|6|G|465
5LYB|1|6|U|466

Current chains

Chain 6

18S rRNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s9

40S ribosomal protein S9-A