J3_5LZA_003

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5LZA|1|A|U|686, 5LZA|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZA_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.197

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5LZA|1|A|U|683
5LZA|1|A|G|684
5LZA|1|A|A|685
5LZA|1|A|U|686
5LZA|1|A|C|687
5LZA|1|A|U|688
5LZA|1|A|A|689
*
5LZA|1|A|U|773
5LZA|1|A|G|774
5LZA|1|A|G|775
*
5LZA|1|A|C|791
5LZA|1|A|A|792
5LZA|1|A|A|793
5LZA|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2