J3_5LZB_003

3D structure

PDB id

5LZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5LZB|1|A|U|686, 5LZB|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZB_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1218

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5LZB|1|A|U|683
5LZB|1|A|G|684
5LZB|1|A|A|685
5LZB|1|A|U|686
5LZB|1|A|C|687
5LZB|1|A|U|688
5LZB|1|A|A|689
*
5LZB|1|A|U|773
5LZB|1|A|G|774
5LZB|1|A|G|775
*
5LZB|1|A|C|791
5LZB|1|A|A|792
5LZB|1|A|A|793
5LZB|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2