J3_5LZC_006

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5LZC|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZC_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1383

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

5LZC|1|A|C|1306
5LZC|1|A|A|1307
5LZC|1|A|A|1308
5LZC|1|A|G|1309
*
5LZC|1|A|C|1605
5LZC|1|A|C|1606
5LZC|1|A|C|1607
5LZC|1|A|A|1608
5LZC|1|A|A|1609
5LZC|1|A|A|1610
5LZC|1|A|C|1611
*
5LZC|1|A|G|1620
5LZC|1|A|U|1621
5LZC|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34