J3_5LZC_027

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

5LZC|1|A|U|34, 5LZC|1|A|U|448, 5LZC|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZC_027 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1095

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

5LZC|1|A|C|32
5LZC|1|A|C|33
5LZC|1|A|U|34
5LZC|1|A|G|35
*
5LZC|1|A|C|445
5LZC|1|A|G|446
5LZC|1|A|A|447
5LZC|1|A|U|448
5LZC|1|A|A|449
5LZC|1|A|G|450
5LZC|1|A|U|451
5LZC|1|A|G|452
5LZC|1|A|A|453
5LZC|1|A|A|454
5LZC|1|A|C|455
5LZC|1|A|C|456
5LZC|1|A|A|457
5LZC|1|A|G|458
5LZC|1|A|U|459
5LZC|1|A|A|460
5LZC|1|A|C|461
*
5LZC|1|A|G|468
5LZC|1|A|G|469
5LZC|1|A|A|470
5LZC|1|A|A|471
5LZC|1|A|A|472
5LZC|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23