J3_5LZD_008

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZD_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0574

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5LZD|1|A|C|2091
5LZD|1|A|U|2092
5LZD|1|A|G|2093
*
5LZD|1|A|C|2196
5LZD|1|A|U|2197
5LZD|1|A|A|2198
5LZD|1|A|A|2199
5LZD|1|A|C|2200
*
5LZD|1|A|G|2223
5LZD|1|A|G|2224
5LZD|1|A|A|2225
5LZD|1|A|C|2226
5LZD|1|A|A|2227
5LZD|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28