J3_5LZD_020
3D structure
- PDB id
- 5LZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5LZD|1|a|A|975, 5LZD|1|a|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZD_020 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0721
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LZD|1|a|U|955
5LZD|1|a|U|956
5LZD|1|a|U|957
5LZD|1|a|A|958
5LZD|1|a|A|959
5LZD|1|a|U|960
5LZD|1|a|U|961
5LZD|1|a|C|962
*
5LZD|1|a|G|973
5LZD|1|a|A|974
5LZD|1|a|A|975
5LZD|1|a|G|976
5LZD|1|a|A|977
5LZD|1|a|A|978
5LZD|1|a|C|979
5LZD|1|a|C|980
5LZD|1|a|U|981
5LZD|1|a|U|982
5LZD|1|a|A|983
5LZD|1|a|C|984
*
5LZD|1|a|G|1221
5LZD|1|a|G|1222
5LZD|1|a|C|1223
5LZD|1|a|U|1224
5LZD|1|a|A|1225
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
- Chain y
- Selenocysteine transfer RNA
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