J3_5LZE_010

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5LZE|1|A|A|2518, 5LZE|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZE_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0927

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5LZE|1|A|C|2517
5LZE|1|A|A|2518
5LZE|1|A|U|2519
5LZE|1|A|C|2520
*
5LZE|1|A|G|2545
5LZE|1|A|U|2546
5LZE|1|A|A|2547
*
5LZE|1|A|U|2561
5LZE|1|A|U|2562
5LZE|1|A|U|2563
5LZE|1|A|A|2564
5LZE|1|A|A|2565
5LZE|1|A|A|2566
5LZE|1|A|G|2567

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14