J3_5LZE_028

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5LZE|1|A|U|321, 5LZE|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZE_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0873

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LZE|1|A|G|297
5LZE|1|A|G|298
5LZE|1|A|A|299
5LZE|1|A|A|300
5LZE|1|A|G|301
*
5LZE|1|A|C|316
5LZE|1|A|G|317
5LZE|1|A|C|318
5LZE|1|A|G|319
5LZE|1|A|A|320
5LZE|1|A|U|321
5LZE|1|A|A|322
5LZE|1|A|C|323
5LZE|1|A|A|324
5LZE|1|A|G|325
*
5LZE|1|A|C|337
5LZE|1|A|G|338
5LZE|1|A|U|339
5LZE|1|A|A|340
5LZE|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24