J3_5LZE_030

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

5LZE|1|A|A|2388, 5LZE|1|A|U|2390, 5LZE|1|A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZE_030 not in the Motif Atlas

Homologous match to J3_5J7L_070

Geometric discrepancy: 0.0891

The information below is about J3_5J7L_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZE|1|A|G|2282
5LZE|1|A|C|2283
5LZE|1|A|A|2284
*
5LZE|1|A|U|2384
5LZE|1|A|C|2385
5LZE|1|A|A|2386
5LZE|1|A|U|2387
5LZE|1|A|A|2388
5LZE|1|A|G|2389
5LZE|1|A|U|2390
5LZE|1|A|G|2391
5LZE|1|A|A|2392
5LZE|1|A|U|2393
5LZE|1|A|C|2394
5LZE|1|A|C|2395
*
5LZE|1|A|G|2421
5LZE|1|A|C|2422
5LZE|1|A|U|2423
5LZE|1|A|C|2424
5LZE|1|A|A|2425
5LZE|1|A|A|2426
5LZE|1|A|C|2427

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15

Chain W

50S ribosomal protein L27

Chain w

CCA 3' end of E-site tRNASec (low occupancy)