J3_5LZF_004

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZF_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1174

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5LZF|1|A|C|698
5LZF|1|A|A|699
5LZF|1|A|G|700
*
5LZF|1|A|C|732
5LZF|1|A|G|733
5LZF|1|A|A|734
5LZF|1|A|A|735
5LZF|1|A|C|736
*
5LZF|1|A|G|760
5LZF|1|A|A|761
5LZF|1|A|U|762
5LZF|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2