J3_5LZF_025
3D structure
- PDB id
- 5LZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 5LZF|1|a|U|1183
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZF_025 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.1932
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LZF|1|a|U|1116
5LZF|1|a|A|1117
5LZF|1|a|U|1118
*
5LZF|1|a|A|1155
5LZF|1|a|G|1156
5LZF|1|a|A|1157
5LZF|1|a|C|1158
*
5LZF|1|a|G|1181
5LZF|1|a|G|1182
5LZF|1|a|U|1183
5LZF|1|a|G|1184
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
Coloring options: