J3_5LZF_029

3D structure

PDB id

5LZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5LZF|1|A|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZF_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1016

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LZF|1|A|G|297
5LZF|1|A|G|298
5LZF|1|A|A|299
5LZF|1|A|A|300
5LZF|1|A|G|301
*
5LZF|1|A|C|316
5LZF|1|A|G|317
5LZF|1|A|C|318
5LZF|1|A|G|319
5LZF|1|A|A|320
5LZF|1|A|U|321
5LZF|1|A|A|322
5LZF|1|A|C|323
5LZF|1|A|A|324
5LZF|1|A|G|325
*
5LZF|1|A|C|337
5LZF|1|A|G|338
5LZF|1|A|U|339
5LZF|1|A|A|340
5LZF|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24