3D structure

PDB id
5LZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with fMetSec-tRNASec in the hybrid pre-translocation state (H)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
5LZF|1|a|C|1214
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZF_034 not in the Motif Atlas
Homologous match to J3_5J7L_053
Geometric discrepancy: 0.138
The information below is about J3_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

5LZF|1|a|C|990
5LZF|1|a|U|991
5LZF|1|a|U|992
5LZF|1|a|G|993
5LZF|1|a|A|994
5LZF|1|a|C|995
5LZF|1|a|A|996
5LZF|1|a|U|997
*
5LZF|1|a|A|1044
5LZF|1|a|C|1045
5LZF|1|a|A|1046
5LZF|1|a|G|1047
*
5LZF|1|a|C|1210
5LZF|1|a|U|1211
5LZF|1|a|U|1212
5LZF|1|a|A|1213
5LZF|1|a|C|1214
5LZF|1|a|G|1215

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain n
30S ribosomal protein S14

Coloring options:


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