J3_5LZS_032

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

5LZS|1|9|U|1535, 5LZS|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZS_032 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.1606

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5LZS|1|9|C|1532
5LZS|1|9|A|1533
5LZS|1|9|C|1534
5LZS|1|9|U|1535
5LZS|1|9|G|1536
*
5LZS|1|9|C|1597
5LZS|1|9|G|1598
5LZS|1|9|U|1599
5LZS|1|9|G|1600
5LZS|1|9|A|1601
5LZS|1|9|U|1602
5LZS|1|9|G|1603
5LZS|1|9|G|1604
*
5LZS|1|9|C|1635
5LZS|1|9|G|1636
5LZS|1|9|A|1637
5LZS|1|9|G|1638

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Uncharacterized protein

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25