J3_5LZS_045
3D structure
- PDB id
- 5LZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCACC*GGGCUG
- Length
- 27 nucleotides
- Bulged bases
- 5LZS|1|9|G|1256, 5LZS|1|9|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZS_045 not in the Motif Atlas
- Geometric match to J3_6CZR_062
- Geometric discrepancy: 0.2565
- The information below is about J3_6CZR_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59791.1
- Basepair signature
- cWW-F-F-F-F-F-tSS-F-F-F-F-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5LZS|1|9|C|1237
5LZS|1|9|U|1238
5LZS|1|9|U|1239
5LZS|1|9|A|1240
5LZS|1|9|A|1241
5LZS|1|9|U|1242
5LZS|1|9|U|1243
5LZS|1|9|U|1244
*
5LZS|1|9|G|1255
5LZS|1|9|G|1256
5LZS|1|9|G|1257
5LZS|1|9|A|1258
5LZS|1|9|A|1259
5LZS|1|9|A|1260
5LZS|1|9|C|1261
5LZS|1|9|C|1262
5LZS|1|9|U|1263
5LZS|1|9|C|1264
5LZS|1|9|A|1265
5LZS|1|9|C|1266
5LZS|1|9|C|1267
*
5LZS|1|9|G|1515
5LZS|1|9|G|1516
5LZS|1|9|G|1517
5LZS|1|9|C|1518
5LZS|1|9|U|1519
5LZS|1|9|G|1520
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain UU
- uS10
- Chain dd
- uS14
- Chain ff
- eS31
- Chain ii
- Transfer RNA; tRNA
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