3D structure

PDB id
5LZT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZT_028 not in the Motif Atlas
Homologous match to J3_4V88_039
Geometric discrepancy: 0.1646
The information below is about J3_4V88_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_47248.1
Basepair signature
cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

5LZT|1|9|U|1340
5LZT|1|9|C|1341
5LZT|1|9|U|1342
5LZT|1|9|U|1343
5LZT|1|9|A|1344
5LZT|1|9|G|1345
*
5LZT|1|9|C|1384
5LZT|1|9|G|1385
5LZT|1|9|A|1386
5LZT|1|9|G|1387
5LZT|1|9|A|1388
5LZT|1|9|C|1389
*
5LZT|1|9|G|1481
5LZT|1|9|C|1482
5LZT|1|9|A|1483
5LZT|1|9|A|1484
5LZT|1|9|U|1485
5LZT|1|9|A|1486

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain CC
uS5
Chain DD
uS3
Chain QQ
uS9
Chain RR
eS17
Chain UU
uS10
Chain dd
uS14

Coloring options:


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