3D structure

PDB id
5LZT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
5LZT|1|9|A|45, 5LZT|1|9|A|46
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZT_044 not in the Motif Atlas
Homologous match to J3_8P9A_069
Geometric discrepancy: 0.0657
The information below is about J3_8P9A_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5LZT|1|9|A|40
5LZT|1|9|G|41
5LZT|1|9|A|42
5LZT|1|9|U|43
5LZT|1|9|U|44
5LZT|1|9|A|45
5LZT|1|9|A|46
5LZT|1|9|G|47
*
5LZT|1|9|C|479
5LZT|1|9|G|480
5LZT|1|9|C|481
5LZT|1|9|G|482
5LZT|1|9|C|483
5LZT|1|9|A|484
5LZT|1|9|A|485
5LZT|1|9|A|486
5LZT|1|9|U|487
*
5LZT|1|9|A|512
5LZT|1|9|G|513
5LZT|1|9|U|514

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain JJ
uS4
Chain XX
uS12
Chain ii
eRF1
Chain jj
eRF3a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2147 s