J3_5LZT_044
3D structure
- PDB id
- 5LZT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 5LZT|1|9|A|45, 5LZT|1|9|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZT_044 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0657
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LZT|1|9|A|40
5LZT|1|9|G|41
5LZT|1|9|A|42
5LZT|1|9|U|43
5LZT|1|9|U|44
5LZT|1|9|A|45
5LZT|1|9|A|46
5LZT|1|9|G|47
*
5LZT|1|9|C|479
5LZT|1|9|G|480
5LZT|1|9|C|481
5LZT|1|9|G|482
5LZT|1|9|C|483
5LZT|1|9|A|484
5LZT|1|9|A|485
5LZT|1|9|A|486
5LZT|1|9|U|487
*
5LZT|1|9|A|512
5LZT|1|9|G|513
5LZT|1|9|U|514
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain JJ
- uS4
- Chain XX
- uS12
- Chain ii
- eRF1
- Chain jj
- eRF3a
Coloring options: