J3_5LZU_013

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZU_013 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.2833

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5LZU|1|5|C|3937
5LZU|1|5|G|3938
5LZU|1|5|G|3939
*
5LZU|1|5|C|4074
5LZU|1|5|U|4075
5LZU|1|5|G|4076
5LZU|1|5|A|4077
5LZU|1|5|C|4078
*
5LZU|1|5|G|4168
5LZU|1|5|G|4169
5LZU|1|5|A|4170
5LZU|1|5|C|4171
5LZU|1|5|A|4172
5LZU|1|5|G|4173

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain G

eL8

Chain N

Ribosomal protein L15