J3_5LZU_027

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

5LZU|1|9|G|1256, 5LZU|1|9|A|1258, 5LZU|1|9|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZU_027 not in the Motif Atlas

Homologous match to J3_8P9A_078

Geometric discrepancy: 0.0876

The information below is about J3_8P9A_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5LZU|1|9|C|1237
5LZU|1|9|U|1238
5LZU|1|9|U|1239
5LZU|1|9|A|1240
5LZU|1|9|A|1241
5LZU|1|9|U|1242
5LZU|1|9|U|1243
5LZU|1|9|U|1244
*
5LZU|1|9|G|1255
5LZU|1|9|G|1256
5LZU|1|9|G|1257
5LZU|1|9|A|1258
5LZU|1|9|A|1259
5LZU|1|9|A|1260
5LZU|1|9|C|1261
5LZU|1|9|C|1262
5LZU|1|9|U|1263
5LZU|1|9|C|1264
5LZU|1|9|A|1265
5LZU|1|9|C|1266
*
5LZU|1|9|G|1516
5LZU|1|9|G|1517
5LZU|1|9|C|1518
5LZU|1|9|U|1519
5LZU|1|9|G|1520

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain SS

uS13

Chain UU

uS10

Chain dd

uS14

Chain ii

Eukaryotic peptide chain release factor subunit 1