J3_5LZU_030

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZU_030 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.103

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5LZU|1|9|U|1350
5LZU|1|9|G|1351
*
5LZU|1|9|U|1360
5LZU|1|9|G|1361
5LZU|1|9|U|1362
5LZU|1|9|C|1363
*
5LZU|1|9|G|1375
5LZU|1|9|A|1376
5LZU|1|9|U|1377
5LZU|1|9|A|1378
5LZU|1|9|A|1379

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain AA

uS2

Chain CC

uS5

Chain RR

eS17