J3_5LZU_032

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

5LZU|1|9|U|1535, 5LZU|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZU_032 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.16

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5LZU|1|9|C|1532
5LZU|1|9|A|1533
5LZU|1|9|C|1534
5LZU|1|9|U|1535
5LZU|1|9|G|1536
*
5LZU|1|9|C|1597
5LZU|1|9|G|1598
5LZU|1|9|U|1599
5LZU|1|9|G|1600
5LZU|1|9|A|1601
5LZU|1|9|U|1602
5LZU|1|9|G|1603
5LZU|1|9|G|1604
*
5LZU|1|9|C|1635
5LZU|1|9|G|1636
5LZU|1|9|A|1637
5LZU|1|9|G|1638

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

uS7

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25