J3_5LZU_037

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZU_037 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.1963

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5LZU|1|5|G|1969
5LZU|1|5|A|1970
5LZU|1|5|U|1971
*
5LZU|1|5|G|1995
5LZU|1|5|C|1996
5LZU|1|5|U|1997
5LZU|1|5|A|1998
5LZU|1|5|A|1999
5LZU|1|5|G|2000
5LZU|1|5|G|2001
*
5LZU|1|5|C|2016
5LZU|1|5|A|2017
5LZU|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain s

uL10

Chain t

uL11