J3_5LZV_006
3D structure
- PDB id
- 5LZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 5LZV|1|5|A|1805, 5LZV|1|5|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZV_006 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.4055
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5LZV|1|5|U|1726
5LZV|1|5|U|1727
*
5LZV|1|5|A|1802
5LZV|1|5|G|1803
5LZV|1|5|A|1804
5LZV|1|5|A|1805
5LZV|1|5|G|1806
*
5LZV|1|5|C|1832
5LZV|1|5|G|1833
5LZV|1|5|U|1834
5LZV|1|5|G|1835
5LZV|1|5|G|1836
5LZV|1|5|A|1837
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain F
- uL30
- Chain T
- eL21
- Chain b
- eL29
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