J3_5LZV_027
3D structure
- PDB id
- 5LZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 5LZV|1|9|G|1256, 5LZV|1|9|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZV_027 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.087
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5LZV|1|9|C|1237
5LZV|1|9|U|1238
5LZV|1|9|U|1239
5LZV|1|9|A|1240
5LZV|1|9|A|1241
5LZV|1|9|U|1242
5LZV|1|9|U|1243
5LZV|1|9|U|1244
*
5LZV|1|9|G|1255
5LZV|1|9|G|1256
5LZV|1|9|G|1257
5LZV|1|9|A|1258
5LZV|1|9|A|1259
5LZV|1|9|A|1260
5LZV|1|9|C|1261
5LZV|1|9|C|1262
5LZV|1|9|U|1263
5LZV|1|9|C|1264
5LZV|1|9|A|1265
5LZV|1|9|C|1266
*
5LZV|1|9|G|1516
5LZV|1|9|G|1517
5LZV|1|9|C|1518
5LZV|1|9|U|1519
5LZV|1|9|G|1520
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain UU
- uS10
- Chain dd
- uS14
- Chain ii
- eRF1(AAQ)
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