J3_5LZV_043

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

5LZV|1|9|A|45, 5LZV|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZV_043 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0693

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZV|1|9|A|40
5LZV|1|9|G|41
5LZV|1|9|A|42
5LZV|1|9|U|43
5LZV|1|9|U|44
5LZV|1|9|A|45
5LZV|1|9|A|46
5LZV|1|9|G|47
*
5LZV|1|9|C|479
5LZV|1|9|G|480
5LZV|1|9|C|481
5LZV|1|9|G|482
5LZV|1|9|C|483
5LZV|1|9|A|484
5LZV|1|9|A|485
5LZV|1|9|A|486
5LZV|1|9|U|487
*
5LZV|1|9|A|512
5LZV|1|9|G|513
5LZV|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain jj

ABCE1