J3_5LZV_045

3D structure

PDB id

5LZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZV_045 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1573

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

5LZV|1|5|A|2598
5LZV|1|5|G|2599
5LZV|1|5|A|2600
5LZV|1|5|A|2601
5LZV|1|5|G|2602
*
5LZV|1|5|C|2737
5LZV|1|5|C|2738
*
5LZV|1|5|G|2742
5LZV|1|5|A|2743
5LZV|1|5|A|2744
5LZV|1|5|A|2745
5LZV|1|5|A|2746
5LZV|1|5|U|2747

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain g

eL34

Chain p

eL43