J3_5LZW_006
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 5LZW|1|5|A|1805, 5LZW|1|5|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZW_006 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.3861
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5LZW|1|5|U|1726
5LZW|1|5|U|1727
*
5LZW|1|5|A|1802
5LZW|1|5|G|1803
5LZW|1|5|A|1804
5LZW|1|5|A|1805
5LZW|1|5|G|1806
*
5LZW|1|5|C|1832
5LZW|1|5|G|1833
5LZW|1|5|U|1834
5LZW|1|5|G|1835
5LZW|1|5|G|1836
5LZW|1|5|A|1837
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain F
- uL30
- Chain T
- eL21
- Chain b
- eL29
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