J3_5LZW_045

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

5LZW|1|9|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZW_045 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0709

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5LZW|1|9|A|40
5LZW|1|9|G|41
5LZW|1|9|A|42
5LZW|1|9|U|43
5LZW|1|9|U|44
5LZW|1|9|A|45
5LZW|1|9|A|46
5LZW|1|9|G|47
*
5LZW|1|9|C|479
5LZW|1|9|G|480
5LZW|1|9|C|481
5LZW|1|9|G|482
5LZW|1|9|C|483
5LZW|1|9|A|484
5LZW|1|9|A|485
5LZW|1|9|A|486
5LZW|1|9|U|487
*
5LZW|1|9|A|512
5LZW|1|9|G|513
5LZW|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain ii

Pelota

Chain jj

Hbs1l