J3_5LZX_005
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 5LZX|1|5|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZX_005 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1709
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5LZX|1|5|G|1545
5LZX|1|5|C|1546
5LZX|1|5|A|1547
5LZX|1|5|G|1548
*
5LZX|1|5|C|1580
5LZX|1|5|G|1581
5LZX|1|5|U|1582
5LZX|1|5|A|1583
5LZX|1|5|G|1584
*
5LZX|1|5|U|1609
5LZX|1|5|C|1610
5LZX|1|5|C|1611
5LZX|1|5|G|1612
5LZX|1|5|A|1613
5LZX|1|5|C|1614
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain R
- eL19
- Chain g
- eL34
- Chain p
- eL43
Coloring options: