J3_5LZX_013
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZX_013 not in the Motif Atlas
- Geometric match to J3_5J7L_044
- Geometric discrepancy: 0.2775
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LZX|1|5|C|3937
5LZX|1|5|G|3938
5LZX|1|5|G|3939
*
5LZX|1|5|C|4074
5LZX|1|5|U|4075
5LZX|1|5|G|4076
5LZX|1|5|A|4077
5LZX|1|5|C|4078
*
5LZX|1|5|G|4168
5LZX|1|5|G|4169
5LZX|1|5|A|4170
5LZX|1|5|C|4171
5LZX|1|5|A|4172
5LZX|1|5|G|4173
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- Ribosomal protein L15
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