J3_5LZX_020
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZX_020 not in the Motif Atlas
- Homologous match to J3_8P9A_068
- Geometric discrepancy: 0.0808
- The information below is about J3_8P9A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LZX|1|9|A|40
5LZX|1|9|G|41
*
5LZX|1|9|C|481
5LZX|1|9|G|482
5LZX|1|9|C|483
5LZX|1|9|A|484
5LZX|1|9|A|485
5LZX|1|9|A|486
5LZX|1|9|U|487
*
5LZX|1|9|A|512
5LZX|1|9|G|513
5LZX|1|9|U|514
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain XX
- uS12
- Chain ii
- Protein pelota homolog
- Chain jj
- HBS1-like protein
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