J3_5LZY_042

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

5LZY|1|5|U|4882, 5LZY|1|5|A|4938, 5LZY|1|5|C|4940, 5LZY|1|5|A|4943, 5LZY|1|5|C|4944, 5LZY|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZY|1|5|C|4749
5LZY|1|5|G|4750
5LZY|1|5|G|4751
5LZY|1|5|U|4752
5LZY|1|5|U|4753
5LZY|1|5|G|4754
*
5LZY|1|5|C|4879
5LZY|1|5|C|4880
5LZY|1|5|U|4881
5LZY|1|5|U|4882
5LZY|1|5|C|4883
*
5LZY|1|5|G|4936
5LZY|1|5|C|4937
5LZY|1|5|A|4938
5LZY|1|5|C|4939
5LZY|1|5|C|4940
5LZY|1|5|G|4941
5LZY|1|5|C|4942
5LZY|1|5|A|4943
5LZY|1|5|C|4944
5LZY|1|5|G|4945
5LZY|1|5|U|4946
5LZY|1|5|U|4947
5LZY|1|5|C|4948
5LZY|1|5|G|4949
5LZY|1|5|U|4950
5LZY|1|5|G|4951

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

eL14

Chain O

uL13

Chain f

eL33