J3_5LZZ_040

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZZ_040 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1564

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LZZ|1|5|A|2598
5LZZ|1|5|G|2599
5LZZ|1|5|A|2600
5LZZ|1|5|A|2601
5LZZ|1|5|G|2602
*
5LZZ|1|5|C|2737
5LZZ|1|5|C|2738
*
5LZZ|1|5|G|2742
5LZZ|1|5|A|2743
5LZZ|1|5|A|2744
5LZZ|1|5|A|2745
5LZZ|1|5|A|2746
5LZZ|1|5|U|2747

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain g

eL34

Chain p

eL43