J3_5LZZ_043
3D structure
- PDB id
- 5LZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 5LZZ|1|9|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZZ_043 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0673
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5LZZ|1|9|A|40
5LZZ|1|9|G|41
5LZZ|1|9|A|42
5LZZ|1|9|U|43
5LZZ|1|9|U|44
5LZZ|1|9|A|45
5LZZ|1|9|A|46
5LZZ|1|9|G|47
*
5LZZ|1|9|C|479
5LZZ|1|9|G|480
5LZZ|1|9|C|481
5LZZ|1|9|G|482
5LZZ|1|9|C|483
5LZZ|1|9|A|484
5LZZ|1|9|A|485
5LZZ|1|9|A|486
5LZZ|1|9|U|487
*
5LZZ|1|9|A|512
5LZZ|1|9|G|513
5LZZ|1|9|U|514
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain XX
- uS12
- Chain ii
- Protein pelota homolog
- Chain jj
- HBS1-like protein
Coloring options: