J3_5M1J_007

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAC*GCUAAGG*CACC

Length

15 nucleotides

Bulged bases

5M1J|1|14|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5M1J_007 not in the Motif Atlas

Geometric match to J3_8VTW_042

Geometric discrepancy: 0.3111

The information below is about J3_8VTW_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46457.1

Basepair signature

cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5M1J|1|14|G|1229
5M1J|1|14|G|1230
5M1J|1|14|A|1231
5M1J|1|14|C|1232
*
5M1J|1|14|G|1256
5M1J|1|14|C|1257
5M1J|1|14|U|1258
5M1J|1|14|A|1259
5M1J|1|14|A|1260
5M1J|1|14|G|1261
5M1J|1|14|G|1262
*
5M1J|1|14|C|1277
5M1J|1|14|A|1278
5M1J|1|14|C|1279
5M1J|1|14|C|1280

Current chains

Chain 14

25S ribosomal RNA

Nearby chains