J3_5M1J_020
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5M1J|1|22|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5M1J_020 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1004
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5M1J|1|22|A|881
5M1J|1|22|U|882
5M1J|1|22|C|883
5M1J|1|22|A|884
*
5M1J|1|22|U|928
5M1J|1|22|A|929
5M1J|1|22|A|930
5M1J|1|22|C|931
5M1J|1|22|U|932
5M1J|1|22|A|933
5M1J|1|22|C|934
5M1J|1|22|U|935
5M1J|1|22|G|936
*
5M1J|1|22|C|943
5M1J|1|22|A|944
5M1J|1|22|U|945
5M1J|1|22|U|946
5M1J|1|22|U|947
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein L2-A
- Chain B2
- 40S ribosomal protein S1-A
- Chain N2
- 40S ribosomal protein S13
- Chain O2
- 40S ribosomal protein S14-A
- Chain a2
- 40S ribosomal protein S26-B
- Chain p5
- 60S ribosomal protein L43-B
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