J3_5M1J_024
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAAUUUG*CGGGGAAACUCAC*GGCCG
- Length
- 27 nucleotides
- Bulged bases
- 5M1J|1|22|G|1199, 5M1J|1|22|G|1201, 5M1J|1|22|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|22|C|1180
5M1J|1|22|U|1181
5M1J|1|22|U|1182
5M1J|1|22|A|1183
5M1J|1|22|A|1184
5M1J|1|22|U|1185
5M1J|1|22|U|1186
5M1J|1|22|U|1187
5M1J|1|22|G|1188
*
5M1J|1|22|C|1197
5M1J|1|22|G|1198
5M1J|1|22|G|1199
5M1J|1|22|G|1200
5M1J|1|22|G|1201
5M1J|1|22|A|1202
5M1J|1|22|A|1203
5M1J|1|22|A|1204
5M1J|1|22|C|1205
5M1J|1|22|U|1206
5M1J|1|22|C|1207
5M1J|1|22|A|1208
5M1J|1|22|C|1209
*
5M1J|1|22|G|1454
5M1J|1|22|G|1455
5M1J|1|22|C|1456
5M1J|1|22|C|1457
5M1J|1|22|G|1458
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain A1
- Protein DOM34
- Chain P2
- 40S ribosomal protein S15
- Chain Q2
- 40S ribosomal protein S16-A
- Chain S2
- 40S ribosomal protein S18-A
- Chain U2
- 40S ribosomal protein S20
- Chain d2
- 40S ribosomal protein S29-A
- Chain f2
- Ubiquitin-40S ribosomal protein S31
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