J3_5M1J_028
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAC*GGACUAU*AUGGAAGUUU
- Length
- 20 nucleotides
- Bulged bases
- 5M1J|1|22|U|1390, 5M1J|1|22|U|1413, 5M1J|1|22|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|22|A|1336
5M1J|1|22|A|1337
5M1J|1|22|C|1338
*
5M1J|1|22|G|1386
5M1J|1|22|G|1387
5M1J|1|22|A|1388
5M1J|1|22|C|1389
5M1J|1|22|U|1390
5M1J|1|22|A|1391
5M1J|1|22|U|1392
*
5M1J|1|22|A|1406
5M1J|1|22|U|1407
5M1J|1|22|G|1408
5M1J|1|22|G|1409
5M1J|1|22|A|1410
5M1J|1|22|A|1411
5M1J|1|22|G|1412
5M1J|1|22|U|1413
5M1J|1|22|U|1414
5M1J|1|22|U|1415
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain F2
- 40S ribosomal protein S5
- Chain Q2
- 40S ribosomal protein S16-A
- Chain R2
- 40S ribosomal protein S17-B
- Chain U2
- 40S ribosomal protein S20
- Chain d2
- 40S ribosomal protein S29-A
- Chain g2
- Guanine nucleotide-binding protein subunit beta-like protein
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