J3_5M1J_039

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUUCUUCA*UAACU*AGGAAUAGUUUUC

Length

28 nucleotides

Bulged bases

5M1J|1|14|U|1629, 5M1J|1|14|U|1815, 5M1J|1|14|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|G|1623
5M1J|1|14|G|1624
5M1J|1|14|A|1625
5M1J|1|14|U|1626
5M1J|1|14|U|1627
5M1J|1|14|C|1628
5M1J|1|14|U|1629
5M1J|1|14|U|1630
5M1J|1|14|C|1631
5M1J|1|14|A|1632
*
5M1J|1|14|U|1641
5M1J|1|14|A|1642
5M1J|1|14|A|1643
5M1J|1|14|C|1644
5M1J|1|14|U|1645
*
5M1J|1|14|A|1810
5M1J|1|14|G|1811
5M1J|1|14|G|1812
5M1J|1|14|A|1813
5M1J|1|14|A|1814
5M1J|1|14|U|1815
5M1J|1|14|A|1816
5M1J|1|14|G|1817
5M1J|1|14|U|1818
5M1J|1|14|U|1819
5M1J|1|14|U|1820
5M1J|1|14|U|1821
5M1J|1|14|C|1822

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain Z5

60S ribosomal protein L27-A

Chain g5

60S ribosomal protein L34-A

Chain k5

60S ribosomal protein L38